Fatima Farhan

Clinical Bioinformatician | Data Scientist

Bioinformatician with 5 years of experience in analyzing biomedical and clinical data. I connect genomics with clinical picture using data science, machine learning, and a purpose-driven mindset.

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Articles 1 published

nf-core Bioinformatics

When to Use nf-core/sarek and When Another Pipeline Might Be Better

nf-core/sarek is an open-source, Nextflow-based pipeline ideal for reproducible germline and somatic variant calling in both research and clinical settings. Platforms like Bionl simplify adoption by offering a no-code interface and ready-to-run configurations.

Fatima Farhan Aug 11, 2025 6 min

When to Use nf-core/sarek and When Another Pipeline Might Be Better